Fig. 1

Key characteristics of the 3255 Klebsiella pneumoniae species complex (KpSC) isolates. A Distribution of genomes by source, with bars coloured by niche (inset legend), and shaded to indicate sequencing type (lighter for short-read only, darker for short- and long-read). Note that the x-axis is broken due to the large number of genomes from human infections. B KpSC species (inset legend) distribution by source. C Summary of clinically relevant features, showing the presence (bubble) of antimicrobial resistance determinants, virulence determinants, heavy metal- and thermoresistance operons/genes, and plasmid replicon markers across the sources. In B and C, the bubble size corresponds to the percentage of isolates with these features, with the number of isolates shown beside each bubble. Abbreviations: AMR Antimicrobial resistance, MDR multidrug resistance